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    LOW PSII ACCUMULATION-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828995, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LOW PSII ACCUMULATION-like protein
    Primary source
    TAIR:AT4G28740
    Locus tag
    AT4G28740
    See related
    Araport:AT4G28740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16A16.150; F16A16_150
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (14200903..14202766)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene Glutaredoxin family protein Neighboring gene uncharacterized protein Neighboring gene Photosystem I reaction centre subunit IV / PsaE protein Neighboring gene methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) Neighboring gene Tetraspanin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LOW PSII ACCUMULATION1 is involved in efficient assembly of photosystem II in Arabidopsis thaliana. Peng L, et al. Plant Cell, 2006 Apr. PMID 16531500, Free PMC Article
    2. Plastids are major regulators of light signaling in Arabidopsis. Ruckle ME, et al. Plant Physiol, 2012 May. PMID 22383539, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_119018.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    LOW PSII ACCUMULATION-like protein
    NP_567817.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14200903..14202766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119018.3 → NP_567817.1  LOW PSII ACCUMULATION-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567817.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXN5, A0A654FTS0, F4JM22
      Conserved Domains (1) summary
      PLN03098
      Location:94 → 339
      LPA1; LOW PSII ACCUMULATION1; Provisional
    Nucleotide Protein
    Heading Accession and Version

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