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    CSLC5 Cellulose-synthase-like C5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829286, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CSLC5
    Official Full Name
    Cellulose-synthase-like C5
    Primary source
    TAIR:AT4G31590
    Locus tag
    AT4G31590
    See related
    Araport:AT4G31590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCSLC05; ATCSLC5; CELLULOSE-SYNTHASE LIKE C5; Cellulose-synthase-like C5; CSLC05; F28M20.220; F28M20_220
    Summary
    encodes a gene similar to cellulose synthase
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    Genomic context

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    See CSLC5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15309506..15312987, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nucleoporin Neighboring gene serine/arginine-rich 22 Neighboring gene UDP-N-acetylglucosamine (UAA) transporter family Neighboring gene Transcriptional factor B3 family protein Neighboring gene Transcriptional factor B3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The synthesis of xyloglucan, an abundant plant cell wall polysaccharide, requires CSLC function. Kim SJ, et al. Proc Natl Acad Sci U S A, 2020 Aug 18. PMID 32737163, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119308.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulose synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables glycosyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant organ development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in Golgi apparatus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Cellulose-synthase-like C5
    NP_194887.1
    • Cellulose-synthase-like C5 (CSLC5); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Glycosyl transferase family 2 protein (TAIR:AT2G24630.1); Has 5645 Blast hits to 5642 proteins in 1596 species: Archae - 219; Bacteria - 4417; Metazoa - 64; Fungi - 93; Plants - 510; Viruses - 16; Other Eukaryotes - 326 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15309506..15312987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119308.3 → NP_194887.1  Cellulose-synthase-like C5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194887.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178UYZ0, Q56Z56, Q9SB75, W8PV45
      UniProtKB/TrEMBL
      A0A384KEN2
      Conserved Domains (1) summary
      cl11394
      Location:227 → 463
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SB75.1

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