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    nucleoporin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829284, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleoporin
    Primary source
    TAIR:AT4G31570
    Locus tag
    AT4G31570
    See related
    Araport:AT4G31570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28M20.240; F28M20_240
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (15296386..15306480)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 11 Neighboring gene high chlorophyll fluorescence 153 Neighboring gene serine/arginine-rich 22 Neighboring gene Cellulose-synthase-like C5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana AUCSIA-1 regulates auxin biology and physically interacts with a kinesin-related protein. Molesini B, et al. PLoS One, 2012. PMID 22911780, Free PMC Article
    2. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtAUCSIA-1/AtAUCSIA-1IP complex is involved in the regulation of the cytoskeleton dynamics underlying auxin biology.[AUCSIA-1IP]
      Title: Arabidopsis thaliana AUCSIA-1 regulates auxin biology and physically interacts with a kinesin-related protein.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342093.1
    NM_001342097.1
    NM_001342098.1
    NM_119306.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    nucleoporin
    NP_001320105.1
    • CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15296386..15306480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342094.1 → NP_001329594.1  nucleoporin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B875, A0A5S9XXN8

    2. NM_001342095.1 → NP_001329593.1  nucleoporin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B866, A0A5S9XXN8

    3. NM_001342096.1 → NP_001329591.1  nucleoporin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B863, A0A5S9XXN8

    4. NM_001342093.1 → NP_001320105.1  nucleoporin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXN8, F4JSP7

    5. NM_001342097.1 → NP_001329590.1  nucleoporin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B864, A0A5S9XXN8

    6. NM_001342098.1 → NP_001329592.1  nucleoporin [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B868, A0A5S9XXN8

    7. NM_119306.5 → NP_194885.2  nucleoporin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194885.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXN8, F4JSP7
      Conserved Domains (3) summary
      COG1196
      Location:1802 → 2592
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1241 → 2089
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam13863
      Location:1811 → 1912
      DUF4200; Domain of unknown function (DUF4200)
    Nucleotide Protein
    Heading Accession and Version

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