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    TAFII15 TBP-associated factor II 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829300, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAFII15
    Official Full Name
    TBP-associated factor II 15
    Primary source
    TAIR:AT4G31720
    Locus tag
    AT4G31720
    See related
    Araport:AT4G31720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28M20.90; F28M20_90; SALT TOLERANCE DURING GERMINATION 1; STG1; TAF10; TBP-ASSOCIATED FACTOR 10; TBP-associated factor II 15
    Summary
    Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)
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    Genomic context

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    See TAFII15 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (15353796..15356431, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 Neighboring gene glutamate receptor 2.4 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene glutamine dumper 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Temporary expression of the TAF10 gene and its requirement for normal development of Arabidopsis thaliana. Tamada Y, et al. Plant Cell Physiol, 2007 Jan. PMID 17148695
    2. The Arabidopsis mutant stg1 identifies a function for TBP-associated factor 10 in plant osmotic stress adaptation. Gao X, et al. Plant Cell Physiol, 2006 Sep. PMID 16945932
    3. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TAF10 is a selective TATA-box binding protein-associated factor in plants, involved in pleiotropic, but selected morphological events in Arabidopsis. [TAF10]
      Title: Temporary expression of the TAF10 gene and its requirement for normal development of Arabidopsis thaliana.
    2. Overexpression of TAF10 in Arabidopsis improves seed tolerance to salt stress during germination and the knocked-down mutant is more sensitive to salt stress.[TAF10]
      Title: The Arabidopsis mutant stg1 identifies a function for TBP-associated factor 10 in plant osmotic stress adaptation.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342109.1
    NM_119321.4
    NM_179150.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TBP-associated factor II 15
    NP_194900.1
    • TBP-associated factor II 15 (TAFII15); FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID, 23-30kDa subunit (InterPro:IPR003923); Has 372 Blast hits to 372 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 132; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    NP_849481.1
    • TBP-associated factor II 15 (TAFII15); FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID, 23-30kDa subunit (InterPro:IPR003923); Has 372 Blast hits to 372 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 132; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15353796..15356431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179150.4 → NP_849481.1  TBP-associated factor II 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849481.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04173, Q8GY69
      UniProtKB/TrEMBL
      A0A178V2H6
      Conserved Domains (1) summary
      cd07982
      Location:16 → 119
      TAF10; The TATA Binding Protein (TBP) Associated Factor 10

    2. NM_119321.4 → NP_194900.1  TBP-associated factor II 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194900.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04173, Q8GY69
      UniProtKB/TrEMBL
      A0A178V2H6
      Conserved Domains (1) summary
      cd07982
      Location:16 → 119
      TAF10; The TATA Binding Protein (TBP) Associated Factor 10

    3. NM_001342109.1 → NP_001329548.1  TBP-associated factor II 15 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04173, Q8GY69
      UniProtKB/TrEMBL
      A0A178V2H6
      Conserved Domains (1) summary
      cd07982
      Location:16 → 119
      TAF10; The TATA Binding Protein (TBP) Associated Factor 10
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04173.1

    Gene LinkOut

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