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    myb-like protein X [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829516, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myb-like protein X
    Primary source
    TAIR:AT4G33740
    Locus tag
    AT4G33740
    See related
    Araport:AT4G33740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16L1.230; T16L1_230
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (16186791..16189123)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA synthetase class II (D, K and N) family protein Neighboring gene Inositol 1,3,4-trisphosphate 5/6-kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160813.1
    NM_001342229.1
    NM_119532.6
    NM_179158.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi medial cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    myb-like protein X
    NP_001320127.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110 proteins in 2951 species: Archae - 732; Bacteria - 17903; Metazoa - 48520; Fungi - 16808; Plants - 7078; Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI BLink).
    NP_195100.4
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138210 Blast hits to 73191 proteins in 2959 species: Archae - 732; Bacteria - 18006; Metazoa - 48521; Fungi - 16820; Plants - 7078; Viruses - 1046; Other Eukaryotes - 46007 (source: NCBI BLink).
    NP_849489.4
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110 proteins in 2951 species: Archae - 732; Bacteria - 17903; Metazoa - 48520; Fungi - 16808; Plants - 7078; Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16186791..16189123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342230.1 → NP_001329806.1  myb-like protein X [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K3, A0A384KK38, A0A654FV88, Q67YL8

    2. NM_119532.6 → NP_195100.4  myb-like protein X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195100.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K3, A0A384KK38, A0A654FV88, Q67YL8
      Conserved Domains (1) summary
      pfam05087
      Location:159 → 270
      Rota_VP2; Rotavirus VP2 protein

    3. NM_179158.4 → NP_849489.4  myb-like protein X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849489.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K3, A0A384KK38, A0A654FV88, Q67YL8
      Conserved Domains (1) summary
      pfam05087
      Location:159 → 270
      Rota_VP2; Rotavirus VP2 protein

    4. NM_001342229.1 → NP_001320127.1  myb-like protein X [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K3, A0A384KK38, A0A654FV88, Q67YL8

    5. NM_001160813.1 → NP_001154285.1  myb-like protein X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154285.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K3, A0A384KK38, A0A654FV88, Q67YL8
      Conserved Domains (1) summary
      pfam05087
      Location:159 → 270
      Rota_VP2; Rotavirus VP2 protein
    Nucleotide Protein
    Heading Accession and Version

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