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    CHB3 DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829594, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHB3
    Official Full Name
    DNA-binding family protein
    Primary source
    TAIR:AT4G34430
    Locus tag
    AT4G34430
    See related
    Araport:AT4G34430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSWI3D; F10M10.200; F10M10_200; SWITCH/SUCROSE NONFERMENTING 3D
    Summary
    Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002).
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    Genomic context

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    See CHB3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (16460907..16465524)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Sacharowski SP, et al. Plant Cell, 2015 Jul. PMID 26106148, Free PMC Article
    2. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Sarnowski TJ, et al. Plant Cell, 2005 Sep. PMID 16055636, Free PMC Article
    3. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. Liu ZW, et al. PLoS Genet, 2016 May. PMID 27171427, Free PMC Article
    4. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
    5. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119608.3
    NM_179232.1
    NM_179233.2
    NM_202953.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding family protein
    NP_195169.3
    • CHB3; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 17747 Blast hits to 11817 proteins in 958 species: Archae - 45; Bacteria - 1957; Metazoa - 7032; Fungi - 2514; Plants - 988; Viruses - 139; Other Eukaryotes - 5072 (source: NCBI BLink).
    NP_849563.1
    • CHB3; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 16492 Blast hits to 11005 proteins in 907 species: Archae - 40; Bacteria - 1715; Metazoa - 6618; Fungi - 2333; Plants - 955; Viruses - 102; Other Eukaryotes - 4729 (source: NCBI BLink).
    NP_849564.1
    • CHB3; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 16471 Blast hits to 10991 proteins in 902 species: Archae - 40; Bacteria - 1696; Metazoa - 6618; Fungi - 2331; Plants - 955; Viruses - 102; Other Eukaryotes - 4729 (source: NCBI BLink).
    NP_974682.1
    • CHB3; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16460907..16465524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179233.2 → NP_849564.1  DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849564.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65671, Q3E9R6, Q8GZ04, Q8VY05, Q9SZ08
      UniProtKB/TrEMBL
      A0A178V126, A0A5S9XZA0
      Conserved Domains (3) summary
      COG5259
      Location:107 → 441
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      COG5271
      Location:592 → 785
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam16495
      Location:844 → 919
      SWIRM-assoc_1; SWIRM-associated region 1

    2. NM_202953.1 → NP_974682.1  DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974682.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VY05
      Conserved Domains (6) summary
      pfam09528
      Location:437 → 867
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      COG5259
      Location:107 → 441
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      cd00167
      Location:383 → 408
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cd02336
      Location:308 → 341
      ZZ_RSC8; Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and ...
      pfam04433
      Location:148 → 233
      SWIRM; SWIRM domain
      pfam16495
      Location:844 → 918
      SWIRM-assoc_1; SWIRM-associated region 1

    3. NM_179232.1 → NP_849563.1  DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849563.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65671, Q3E9R6, Q8GZ04, Q8VY05, Q9SZ08
      UniProtKB/TrEMBL
      A0A178V126, A0A5S9XZA0
      Conserved Domains (3) summary
      COG5259
      Location:107 → 441
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      COG5271
      Location:592 → 785
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam16495
      Location:844 → 919
      SWIRM-assoc_1; SWIRM-associated region 1

    4. NM_119608.3 → NP_195169.3  DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195169.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VY05
      Conserved Domains (6) summary
      pfam09528
      Location:437 → 865
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      COG5259
      Location:107 → 441
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      cd00167
      Location:383 → 408
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cd02336
      Location:308 → 341
      ZZ_RSC8; Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and ...
      pfam04433
      Location:148 → 233
      SWIRM; SWIRM domain
      pfam16495
      Location:842 → 915
      SWIRM-assoc_1; SWIRM-associated region 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY05.3

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