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    ATP/DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824038, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP/DNA binding protein
    Primary source
    TAIR:AT3G48770
    Locus tag
    AT3G48770
    See related
    Araport:AT3G48770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (18078452..18087414, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cell division control 2 Neighboring gene DHHC-type zinc finger family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine palmitoyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339378.1
    NM_114736.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP/DNA binding protein
    NP_001319711.1
    • DNA binding;ATP binding; FUNCTIONS IN: DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, BED-type predicted (InterPro:IPR003656), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28020.1); Has 779 Blast hits to 661 proteins in 171 species: Archae - 6; Bacteria - 159; Metazoa - 152; Fungi - 67; Plants - 310; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18078452..18087414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339378.1 → NP_001319711.1  ATP/DNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FE72, Q9M305

    2. NM_114736.3 → NP_190446.1  ATP/DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190446.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FE72, Q9M305
      Conserved Domains (1) summary
      pfam02892
      Location:27 → 76
      zf-BED; BED zinc finger
    Nucleotide Protein
    Heading Accession and Version

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