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    MYB27 myb domain protein 27 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824486, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB27
    Official Full Name
    myb domain protein 27
    Primary source
    TAIR:AT3G53200
    Locus tag
    AT3G53200
    See related
    Araport:AT3G53200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB27; myb domain protein 27
    Summary
    Member of the R2R3 factor gene family.
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    Genomic context

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    See MYB27 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19718253..19719507, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nodulin/glutamine synthase-like protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene Thioredoxin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capture of regulatory factors via CRISPR-dCas9 for mechanistic analysis of fine-tuned SERRATE expression in Arabidopsis. Chen W, et al. Nat Plants, 2024 Jan. PMID 38168608
    2. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Kranz HD, et al. Plant J, 1998 Oct. PMID 9839469
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339599.1
    NM_115180.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 27
    NP_566980.1
    • myb domain protein 27 (MYB27); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.1); Has 8985 Blast hits to 8213 proteins in 491 species: Archae - 0; Bacteria - 0; Metazoa - 826; Fungi - 465; Plants - 5890; Viruses - 5; Other Eukaryotes - 1799 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19718253..19719507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115180.3 → NP_566980.1  myb domain protein 27 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566980.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SCP1, Q9ZTE8
      UniProtKB/TrEMBL
      A0A178VAH3, A0A5S9XKD6, A0A654FIG0
      Conserved Domains (1) summary
      PLN03212
      Location:9 → 112
      PLN03212; Transcription repressor MYB5; Provisional

    2. NM_001339599.1 → NP_001325713.1  myb domain protein 27 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAH3, A0A1I9LM30
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCP1.1

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