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    Ribosomal protein S21e [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824556, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein S21e
    Primary source
    TAIR:AT3G53890
    Locus tag
    AT3G53890
    See related
    Araport:AT3G53890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19955344..19956449, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S3 family protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene uracil phosphoribosyltransferase Neighboring gene malate dehydrogenase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Balance between Cytosolic and Chloroplast Translation Affects Leaf Variegation. Wang R, et al. Plant Physiol, 2018 Jan. PMID 29142022, Free PMC Article
    2. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    3. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084811.1
    NM_115249.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein S21e
    NP_001078280.1
    • Ribosomal protein S21e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT5G27700.1); Has 661 Blast hits to 661 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    NP_190957.1
    • Ribosomal protein S21e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT5G27700.1); Has 661 Blast hits to 661 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19955344..19956449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115249.4 → NP_190957.1  Ribosomal protein S21e [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190957.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M337
      UniProtKB/TrEMBL
      A0A178VG46, A0A5S9XKK4, Q8LCB7
      Conserved Domains (1) summary
      pfam01249
      Location:1 → 77
      Ribosomal_S21e; Ribosomal protein S21e

    2. NM_001084811.1 → NP_001078280.1  Ribosomal protein S21e [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078280.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M337
      UniProtKB/TrEMBL
      A0A178VG46, A0A5S9XKK4, Q8LCB7
      Conserved Domains (1) summary
      pfam01249
      Location:1 → 77
      Ribosomal_S21e; Ribosomal protein S21e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M337.1

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