HRGP1 hydroxyproline-rich glycoprotein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: HRGP1
Official Full Name: hydroxyproline-rich glycoprotein
Primary source: TAIR:AT3G54590
Locus tag: AT3G54590
See related: Araport:AT3G54590
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATHRGP1; hydroxyproline-rich glycoprotein
Summary: Encodes a hydroxyproline-rich glycoprotein.
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Genomic context

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See HRGP1 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 2

Sequence:: Chromosome: 3; NC_003074.8 (20206128..20208783)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001339684.1

Supported by ESTs:

NM_001339685.1

Supported by ESTs:

NM_115316.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables structural constituent of cell wall	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in plant-type cell wall organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: hydroxyproline-rich glycoprotein

NP_191022.2

hydroxyproline-rich glycoprotein (HRGP1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

20206128..20208783

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_115316.3 → NP_191022.2 hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_191022.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9M1G9
NM_001339684.1 → NP_001325987.1 hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LMW9
NM_001339685.1 → NP_001325986.1 hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JCZ2, Q9CAZ9, Q9M1G9