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    SDP1-LIKE sugar-dependent 1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824881, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDP1-LIKE
    Official Full Name
    sugar-dependent 1-like protein
    Primary source
    TAIR:AT3G57140
    Locus tag
    AT3G57140
    See related
    Araport:AT3G57140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    sugar-dependent 1-like
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    Genomic context

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    See SDP1-LIKE in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (21150242..21153636, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Ankyrin repeat family protein / BTB/POZ domain-containing protein Neighboring gene homologue of NAP57 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Storage oil hydrolysis during early seedling growth. Quettier AL, et al. Plant Physiol Biochem, 2009 Jun. PMID 19136267
    2. Seed storage oil mobilization is important but not essential for germination or seedling establishment in Arabidopsis. Kelly AA, et al. Plant Physiol, 2011 Oct. PMID 21825108, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_115573.4
    NM_202720.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables triacylglycerol lipase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    sugar-dependent 1-like protein
    NP_191273.1
    • sugar-dependent 1-like (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Patatin-like phospholipase family protein (TAIR:AT5G04040.1); Has 1079 Blast hits to 1061 proteins in 366 species: Archae - 0; Bacteria - 487; Metazoa - 11; Fungi - 361; Plants - 73; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
    NP_974449.1
    • sugar-dependent 1-like (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Patatin-like phospholipase family protein (TAIR:AT5G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21150242..21153636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115573.4 → NP_191273.1  sugar-dependent 1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191273.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1I6
      UniProtKB/TrEMBL
      A0A178V781, A0A5S9XLN1, A0A654FH60
      Conserved Domains (2) summary
      cd07231
      Location:163 → 570
      Pat_SDP1-like; Sugar-Dependent 1 like lipase
      pfam11815
      Location:97 → 226
      DUF3336; Domain of unknown function (DUF3336)

    2. NM_202720.2 → NP_974449.1  sugar-dependent 1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974449.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1I6
      UniProtKB/TrEMBL
      A0A178V781, A0A5S9XLN1, A0A654FH60
      Conserved Domains (2) summary
      cd07231
      Location:163 → 570
      Pat_SDP1-like; Sugar-Dependent 1 like lipase
      pfam11815
      Location:97 → 226
      DUF3336; Domain of unknown function (DUF3336)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1I6.1

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