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    SKIP4 SKP1 interacting partner 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825307, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SKIP4
    Official Full Name
    SKP1 interacting partner 4
    Primary source
    TAIR:AT3G61350
    Locus tag
    AT3G61350
    See related
    Araport:AT3G61350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SKP1 interacting partner 4
    Summary
    Encodes an SKP1 interacting partner (SKIP4).
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    Genomic context

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    See SKIP4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (22702632..22704481)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene pre-mRNA-splicing factor CWC22-like protein (DUF3245) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Farrás R, et al. EMBO J, 2001 Jun 1. PMID 11387208, Free PMC Article
    2. The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Vergnolle C, et al. Plant Physiol, 2005 Nov. PMID 16258011, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001340087.1
    NM_115999.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    SKP1 interacting partner 4
    NP_567112.1
    • SKP1 interacting partner 4 (SKIP4); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 3566 Blast hits to 2975 proteins in 175 species: Archae - 6; Bacteria - 195; Metazoa - 2199; Fungi - 2; Plants - 1060; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22702632..22704481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115999.5 → NP_567112.1  SKP1 interacting partner 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567112.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GW14, Q9FV01, Q9M2C9
      UniProtKB/TrEMBL
      A0A5S9XPH5, A0A7G2EZK0
      Conserved Domains (4) summary
      PHA03098
      Location:100 → 322
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:83 → 150
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:112 → 157
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:22 → 60
      F-box; F-box domain

    2. NM_001340087.1 → NP_001327045.1  SKP1 interacting partner 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GW14, Q9FV01, Q9M2C9
      UniProtKB/TrEMBL
      A0A5S9XPH5, A0A7G2EZK0
      Conserved Domains (4) summary
      PHA03098
      Location:100 → 322
      PHA03098; kelch-like protein; Provisional
      PRK14131
      Location:83 → 150
      PRK14131; N-acetylneuraminate epimerase
      sd00038
      Location:112 → 157
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:22 → 60
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2C9.1

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