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    POB1 POZ/BTB containin G-protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825333, updated on 18-Sep-2024

    Summary

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    Official Symbol
    POB1
    Official Full Name
    POZ/BTB containin G-protein 1
    Primary source
    TAIR:AT3G61600
    Locus tag
    AT3G61600
    See related
    Araport:AT3G61600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPOB1; F15G16.4; light-response BTB 2; LRB2; POZ/BTB containin G-protein 1; POZ/BTB CONTAINING-PROTEIN ATPOB1
    Summary
    POZ/BTB containing-protein AtPOB1. Involvement in protein ubiquitylation is predicted based on physical interaction with CULLIN 3 proteins.
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    Genomic context

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    See POB1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (22795422..22798324)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Fatty acid/sphingolipid desaturase Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene 3'-5'-exoribonuclease family protein Neighboring gene cytokinin response factor 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Kim H, et al. Plant Mol Biol, 2016 Feb. PMID 26667153
    2. The light-response BTB1 and BTB2 proteins assemble nuclear ubiquitin ligases that modify phytochrome B and D signaling in Arabidopsis. Christians MJ, et al. Plant Physiol, 2012 Sep. PMID 22732244, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LRB1 (LIGHT-RESPONSE BTB1) and LRB2 (LIGHT-RESPONSE BTB2) are involved in many developmental processes mediated by phytochrome B and phytochrome D.
      Title: The light-response BTB1 and BTB2 proteins assemble nuclear ubiquitin ligases that modify phytochrome B and D signaling in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116025.4
    NM_180402.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to red light IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POZ/BTB containin G-protein 1
    NP_567115.1
    • POZ/BTB containin G-protein 1 (POB1); CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ/Kelch-associated protein (TAIR:AT2G46260.1); Has 3475 Blast hits to 3460 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 3231; Fungi - 0; Plants - 131; Viruses - 11; Other Eukaryotes - 102 (source: NCBI BLink).
    NP_850733.1
    • POZ/BTB containin G-protein 1 (POB1); CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ/Kelch-associated protein (TAIR:AT2G46260.1); Has 3471 Blast hits to 3456 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 3227; Fungi - 0; Plants - 131; Viruses - 11; Other Eukaryotes - 102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22795422..22798324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180402.2 → NP_850733.1  POZ/BTB containin G-protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850733.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FPW6, Q9M309
      UniProtKB/TrEMBL
      A0A178VJU3, A0A5S9XNJ0
      Conserved Domains (2) summary
      smart00875
      Location:268 → 353
      BACK; BTB And C-terminal Kelch
      cd18186
      Location:146 → 228
      BTB_POZ_ZBTB_KLHL-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins

    2. NM_116025.4 → NP_567115.1  POZ/BTB containin G-protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567115.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMK9
      Conserved Domains (2) summary
      smart00875
      Location:268 → 353
      BACK; BTB And C-terminal Kelch
      cd18186
      Location:146 → 228
      BTB_POZ_ZBTB_KLHL-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FPW6.2

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