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    influenza virus NS1A-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830423, updated on 18-Sep-2024

    Summary

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    Official Full Name
    influenza virus NS1A-binding protein
    Primary source
    TAIR:AT5G01660
    Locus tag
    AT5G01660
    See related
    Araport:AT5G01660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A7.180; F7A7_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (244250..249207, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene prenylated RAB acceptor 1.B5 Neighboring gene Tautomerase/MIF superfamily protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene cation/H+ exchanger 26

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342605.1
    NM_120244.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to endoplasmic reticulum stress IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    influenza virus NS1A-binding protein
    NP_195786.4
    • CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      244250..249207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342604.1 → NP_001331423.1  influenza virus NS1A-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y0H6, A0A654FXI5, F4K9G6
      Conserved Domains (4) summary
      PHA03098
      Location:370 → 589
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:459 → 501
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:599 → 642
      Kelch_1; Kelch motif
      pfam10539
      Location:19 → 146
      Dev_Cell_Death; Development and cell death domain

    2. NM_120244.6 → NP_195786.4  influenza virus NS1A-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195786.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y0H6, A0A654FXI5, F4K9G6
      Conserved Domains (4) summary
      PHA03098
      Location:370 → 589
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:459 → 501
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:599 → 642
      Kelch_1; Kelch motif
      pfam10539
      Location:19 → 146
      Dev_Cell_Death; Development and cell death domain

    3. NM_001342605.1 → NP_001331422.1  influenza virus NS1A-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDS4
    Nucleotide Protein
    Heading Accession and Version

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