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    Plant invertase/pectin methylesterase inhibitor superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830379, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant invertase/pectin methylesterase inhibitor superfamily
    Primary source
    TAIR:AT5G04970
    Locus tag
    AT5G04970
    See related
    Araport:AT5G04970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUG13.17; MUG13_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (1464079..1467161, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nicotianamine synthase 1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene DNAse I-like superfamily protein Neighboring gene SAD1/UNC-84 domain protein 1 Neighboring gene translocon at the outer envelope membrane of chloroplasts 34

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_120579.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant invertase/pectin methylesterase inhibitor superfamily
    NP_196116.1
    • Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G10720.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1464079..1467161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120579.3 → NP_196116.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196116.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FF77
      UniProtKB/TrEMBL
      A0A5S9Y1H6, A0A654FYK7
      Conserved Domains (3) summary
      PLN03043
      Location:85 → 621
      PLN03043; Probable pectinesterase/pectinesterase inhibitor; Provisional
      cd15798
      Location:87 → 239
      PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
      pfam01095
      Location:308 → 606
      Pectinesterase; Pectinesterase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FF77.1

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