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    EPIDERMAL PATTERNING FACTOR-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830895, updated on 18-Sep-2024

    Summary

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    Official Full Name
    EPIDERMAL PATTERNING FACTOR-like protein
    Primary source
    TAIR:AT5G10310
    Locus tag
    AT5G10310
    See related
    Araport:AT5G10310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18D22.80; F18D22_80
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (3241439..3242380, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat transmembrane protein kinase family protein Neighboring gene methyl esterase 5 Neighboring gene ATP synthase subunit B Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene microRNA ath-MIR5998b precursor Neighboring gene microRNA ath-MIR5998a precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Signaling by the EPFL-ERECTA family coordinates female germline specification through the BZR1 family in Arabidopsis. Cai H, et al. Plant Cell, 2023 Apr 20. PMID 36748257, Free PMC Article
    2. EPFL Signals in the Boundary Region of the SAM Restrict Its Size and Promote Leaf Initiation. Kosentka PZ, et al. Plant Physiol, 2019 Jan. PMID 30409857, Free PMC Article
    3. The EPFL-ERf-SERK signaling controls integument development in Arabidopsis. Li M, et al. New Phytol, 2023 Apr. PMID 36564978
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343100.1
    NM_121069.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in brassinosteroid mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in guard cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in meristem maintenance IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in plant ovule development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in stomatal complex development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    EPIDERMAL PATTERNING FACTOR-like protein
    NP_196593.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3241439..3242380 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121069.4 → NP_196593.1  EPIDERMAL PATTERNING FACTOR-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196593.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFT5
      UniProtKB/TrEMBL
      A0A178UHQ6, A0A5S9Y3B0
      Conserved Domains (1) summary
      pfam17181
      Location:48 → 122
      EPF; Epidermal patterning factor proteins

    2. NM_001343100.1 → NP_001330790.1  EPIDERMAL PATTERNING FACTOR-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBV7
      Conserved Domains (1) summary
      pfam17181
      Location:53 → 128
      EPF; Epidermal patterning factor proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFT5.1

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