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    Splicing factor, CC1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830848, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Splicing factor, CC1-like protein
    Primary source
    TAIR:AT5G09880
    Locus tag
    AT5G09880
    See related
    Araport:AT5G09880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYH9.9; MYH9_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (3081389..3085291, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cellulose synthase 5 Neighboring gene uncharacterized protein Neighboring gene Protein kinase family protein Neighboring gene 26S proteasome regulatory subunit, putative (RPN5) Neighboring gene Ras-related small GTP-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121025.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Splicing factor, CC1-like protein
    NP_568220.1
    • Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT2G16940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3081389..3085291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121025.4 → NP_568220.1  Splicing factor, CC1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568220.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3M9, A0A654FZZ2, Q93Y25
      Conserved Domains (5) summary
      cd12283
      Location:169 → 241
      RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      cd12284
      Location:267 → 340
      RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
      cd12285
      Location:434 → 517
      RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      TIGR01622
      Location:85 → 517
      SF-CC1; splicing factor, CC1-like family
      pfam15519
      Location:366 → 452
      RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein
    Nucleotide Protein
    Heading Accession and Version

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