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    Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831179, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Auxin-responsive GH3 family protein
    Primary source
    TAIR:AT5G13380
    Locus tag
    AT5G13380
    See related
    Araport:AT5G13380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22N19.30; T22N19_30
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (4289839..4292441)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Auxin-responsive GH3 family protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene no exine formation 1 Neighboring gene Major facilitator superfamily protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Auxin-responsive GH3 family protein
    NP_196842.2
    • Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1506 Blast hits to 1424 proteins in 238 species: Archae - 0; Bacteria - 490; Metazoa - 52; Fungi - 2; Plants - 670; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4289839..4292441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121341.2 → NP_196842.2  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196842.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4C0, A0A654G0P6, F4K2J6
      Conserved Domains (2) summary
      cl21606
      Location:31 → 616
      PLN02247; indole-3-acetic acid-amido synthetase
      pfam03321
      Location:47 → 594
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version

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