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    Glycosyl hydrolase family 38 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831246, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase family 38 protein
    Primary source
    TAIR:AT5G13980
    Locus tag
    AT5G13980
    See related
    Araport:AT5G13980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC12.38; MAC12_38
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    30
    Sequence:
    Chromosome: 5; NC_003076.8 (4508406..4514666)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nuclear factor kappa-B-binding protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein Neighboring gene midasin-like protein Neighboring gene exocyst subunit exo70 family protein C2 Neighboring gene NAC domain containing protein 84 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    3. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036801.1
    NM_121401.5
    NM_180706.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mannose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Glycosyl hydrolase family 38 protein
    NP_001031878.1
    • Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1157 Blast hits to 1109 proteins in 192 species: Archae - 7; Bacteria - 147; Metazoa - 691; Fungi - 22; Plants - 155; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    NP_196902.2
    • Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851037.2
    • Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1172 Blast hits to 1119 proteins in 194 species: Archae - 7; Bacteria - 147; Metazoa - 695; Fungi - 22; Plants - 164; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4508406..4514666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180706.3 → NP_851037.2  Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851037.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E9H8, Q8LPJ3, Q9FFX7
      UniProtKB/TrEMBL
      A0A178UJ51, A0A5S9Y4L9, A0A654G1A2
      Conserved Domains (2) summary
      PLN02701
      Location:36 → 820
      PLN02701; alpha-mannosidase
      cd10810
      Location:37 → 313
      GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

    2. NM_121401.5 → NP_196902.2  Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196902.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E9H8, Q8LPJ3, Q9FFX7
      UniProtKB/TrEMBL
      A0A178UJ51, A0A5S9Y4L9, A0A654G1A2
      Conserved Domains (2) summary
      PLN02701
      Location:36 → 820
      PLN02701; alpha-mannosidase
      cd10810
      Location:37 → 313
      GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

    3. NM_001036801.1 → NP_001031878.1  Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031878.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G1A2, F4K5E7
      Conserved Domains (3) summary
      cd10810
      Location:37 → 313
      GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
      smart00872
      Location:356 → 429
      Alpha-mann_mid; Alpha mannosidase, middle domain
      pfam07748
      Location:594 → 921
      Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPJ3.1

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