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    metalloendopeptidase / zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834269, updated on 18-Sep-2024

    Summary

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    Official Full Name
    metalloendopeptidase / zinc ion binding protein
    Primary source
    TAIR:AT5G42620
    Locus tag
    AT5G42620
    See related
    Araport:AT5G42620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFO20.3; MFO20_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    16
    Sequence:
    Chromosome: 5; NC_003076.8 (17066197..17071963)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene marneral synthase Neighboring gene calcium uniporter (DUF607) Neighboring gene Homeodomain-like superfamily protein Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203522.1
    NM_123626.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    metalloendopeptidase / zinc ion binding protein
    NP_001190451.1
    • metalloendopeptidases;zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, cell adhesion; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032), Peptidase M8, leishmanolysin (InterPro:IPR001577).
    NP_568608.2
    • metalloendopeptidases;zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, cell adhesion; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), EGF-like (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032), Peptidase M8, leishmanolysin (InterPro:IPR001577); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17066197..17071963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123626.4 → NP_568608.2  metalloendopeptidase / zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568608.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9I5, A0A654G792, Q67ZD0
      Conserved Domains (2) summary
      cl19482
      Location:58 → 592
      Peptidase_M8; Leishmanolysin
      pfam07974
      Location:638 → 661
      EGF_2; EGF-like domain

    2. NM_001203522.1 → NP_001190451.1  metalloendopeptidase / zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190451.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G792, F4K306
      Conserved Domains (2) summary
      pfam07974
      Location:629 → 661
      EGF_2; EGF-like domain
      cl19482
      Location:58 → 592
      Peptidase_M8; Leishmanolysin
    Nucleotide Protein
    Heading Accession and Version

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