U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Abscisic acid-responsive (TB2/DP1, HVA22) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834262, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    Primary source
    TAIR:AT5G42560
    Locus tag
    AT5G42560
    See related
    Araport:AT5G42560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K16E1.3; K16E1_3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (17014847..17017252)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene exoribonuclease 2 Neighboring gene inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784) Neighboring gene miscRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001085223.1
    NM_001125889.1
    NM_123620.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    NP_001078692.1
    • Abscisic acid-responsive (TB2/DP1, HVA22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 2054 Blast hits to 2008 proteins in 266 species: Archae - 0; Bacteria - 108; Metazoa - 929; Fungi - 303; Plants - 514; Viruses - 6; Other Eukaryotes - 194 (source: NCBI BLink).
    NP_001119361.1
    • Abscisic acid-responsive (TB2/DP1, HVA22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_568606.1
    • Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17014847..17017252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123620.4 → NP_568606.1  Abscisic acid-responsive (TB2/DP1, HVA22) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568606.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LE10, Q9FH69
      UniProtKB/TrEMBL
      A0A178UH03, A0A654G8B6, Q1LYX3
      Conserved Domains (1) summary
      pfam03134
      Location:19 → 97
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    2. NM_001125889.1 → NP_001119361.1  Abscisic acid-responsive (TB2/DP1, HVA22) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119361.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UH03, A8MRL9
      Conserved Domains (1) summary
      pfam03134
      Location:1 → 85
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    3. NM_001085223.1 → NP_001078692.1  Abscisic acid-responsive (TB2/DP1, HVA22) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078692.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UH03, A8MRL9
      Conserved Domains (1) summary
      pfam03134
      Location:1 → 85
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LE10.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools