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    Plant VAMP (vesicle-associated membrane protein) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834764, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant VAMP (vesicle-associated membrane protein) family protein
    Primary source
    TAIR:AT5G47180
    Locus tag
    AT5G47180
    See related
    Araport:AT5G47180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQL5.3; MQL5_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (19161009..19163980, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene low-molecular-weight cysteine-rich 3 Neighboring gene Ribosomal protein L19 family protein Neighboring gene RAB GTPase homolog 1A Neighboring gene Hyaluronan / mRNA binding family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124089.5
    NM_180813.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Plant VAMP (vesicle-associated membrane protein) family protein
    NP_199529.1
    • Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851144.1
    • Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1065 Blast hits to 1054 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 138; Plants - 424; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19161009..19163980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180813.4 → NP_851144.1  Plant VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851144.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVU1
      UniProtKB/TrEMBL
      A0A178UAE4, A0A5S9YBR9
      Conserved Domains (1) summary
      pfam00635
      Location:9 → 116
      Motile_Sperm; MSP (Major sperm protein) domain

    2. NM_124089.5 → NP_199529.1  Plant VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199529.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVU1
      UniProtKB/TrEMBL
      A0A178UAE4, A0A5S9YBR9
      Conserved Domains (1) summary
      pfam00635
      Location:9 → 116
      Motile_Sperm; MSP (Major sperm protein) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVU1.1

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