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    Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834865, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phototropic-responsive NPH3 family protein
    Primary source
    TAIR:AT5G48130
    Locus tag
    AT5G48130
    See related
    Araport:AT5G48130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIF21.2; MIF21_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (19516102..19518513)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene GRAS family transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Phototropic-responsive NPH3 family protein
    NP_199624.1
    • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G31820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19516102..19518513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124187.2 → NP_199624.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199624.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUB9
      UniProtKB/TrEMBL
      A0A178UPK4
      Conserved Domains (3) summary
      smart00225
      Location:43 → 122
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam03000
      Location:217 → 445
      NPH3; NPH3 family
      cl02518
      Location:43 → 133
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUB9.1

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