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    XIP1 Leucine-rich repeat transmembrane protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835028, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XIP1
    Official Full Name
    Leucine-rich repeat transmembrane protein kinase family protein
    Primary source
    TAIR:AT5G49660
    Locus tag
    AT5G49660
    See related
    Araport:AT5G49660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C-terminally encoded peptide receptor 1; CEPR1; MNI5.4; MNI5_4; XYLEM INTERMIXED WITH PHLOEM 1
    Summary
    The gene encodes receptorlike kinase (RLK). Involved in the maintenance organization of cell files or cell morphology in conductive elements. Functions as a receptor for CEP1 peptide. Mediates nitrate uptake signaling.
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    Genomic context

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    See XIP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (20161140..20164729, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene xylulose kinase-2 Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA Neighboring gene SABRE-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield. Taleski M, et al. Plant Physiol, 2020 Jun. PMID 32317363, Free PMC Article
    2. XYLEM INTERMIXED WITH PHLOEM1, a leucine-rich repeat receptor-like kinase required for stem growth and vascular development in Arabidopsis thaliana. Bryan AC, et al. Planta, 2012 Jan. PMID 21853254
    3. CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis. Roberts I, et al. J Exp Bot, 2016 Aug. PMID 27296247, Free PMC Article
    4. CEP-CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth. Chapman K, et al. J Exp Bot, 2019 Aug 7. PMID 31056646, Free PMC Article
    5. Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling. Tabata R, et al. Science, 2014 Oct 17. PMID 25324386

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield.
      Title: The Peptide Hormone Receptor CEPR1 Functions in the Reproductive Tissue to Control Seed Size and Yield.
    2. C-TERMINALLY ENCODED PEPTIDE 5 (CEP5) is a novel, auxin-repressed and phloem pole-expressed signal assisting in the formation of lateral roots. In addition, there is evidence for the involvement of its proposed receptor, XYLEM INTERMIXED WITH PHLOEM 1 (XIP1)/CEP RECEPTOR 1 (CEPR1), during the process of lateral root initiation.
      Title: CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.
    3. this study concluded that two LRR-RKs At5g49660 and At1g72180 function as CEP receptors and named them CEPR1 and CEPR2.
      Title: Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124344.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables peptide binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables peptide hormone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables peptide hormone receptor binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables peptide receptor activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transmembrane receptor protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lateral root formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within nitrate import IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in nitrate import IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in positive regulation of lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of anthocyanin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of lignin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of secondary cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of shoot system development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to nitrate starvation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem and phloem pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat transmembrane protein kinase family protein
    NP_199777.1
    • Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G09970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20161140..20164729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124344.3 → NP_199777.1  Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199777.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GY29, Q9FGL5
      UniProtKB/TrEMBL
      A0A178U894, A0A5S9YCJ2, A0A654G9R7
      Conserved Domains (2) summary
      PLN00113
      Location:47 → 933
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:245 → 269
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGL5.1

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