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    HCF208 chaperone (DUF2930) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835287, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HCF208
    Official Full Name
    chaperone (DUF2930)
    Primary source
    TAIR:AT5G52110
    Locus tag
    AT5G52110
    See related
    Araport:AT5G52110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CCB2; COFACTOR ASSEMBLY OF COMPLEX C; HIGH CHLOROPHYLL FLUORESCENCE 208; MSG15.21; MSG15_21
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    Genomic context

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    See HCF208 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (21171634..21174019, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Dihydrodipicolinate reductase, bacterial/plant Neighboring gene ribonuclease H superfamily polynucleotidyl transferase Neighboring gene phloem protein 2-A14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel pathway of cytochrome c biogenesis is involved in the assembly of the cytochrome b6f complex in arabidopsis chloroplasts. Lezhneva L, et al. J Biol Chem, 2008 Sep 5. PMID 18593701, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001036983.3
    NM_124590.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytochrome b6f complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chaperone (DUF2930)
    NP_001032060.1
    • HIGH CHLOROPHYLL FLUORESCENCE 208 (HCF208); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2930 (InterPro:IPR021325); Has 125 Blast hits to 125 proteins in 55 species: Archae - 0; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_200024.1
    • HIGH CHLOROPHYLL FLUORESCENCE 208 (HCF208); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2930 (InterPro:IPR021325); Has 125 Blast hits to 125 proteins in 55 species: Archae - 0; Bacteria - 72; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21171634..21174019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036983.3 → NP_001032060.1  chaperone (DUF2930) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032060.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YA4, Q9FJ81
      UniProtKB/TrEMBL
      A0A178UEB1, A0A5S9YD87
      Conserved Domains (1) summary
      pfam11152
      Location:64 → 273
      DUF2930; Protein of unknown function (DUF2930)

    2. NM_124590.2 → NP_200024.1  chaperone (DUF2930) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200024.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YA4, Q9FJ81
      UniProtKB/TrEMBL
      A0A178UEB1, A0A5S9YD87
      Conserved Domains (1) summary
      pfam11152
      Location:64 → 273
      DUF2930; Protein of unknown function (DUF2930)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJ81.1

    Gene LinkOut

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