U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CLPX CLP protease regulatory subunit X [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835416, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CLPX
    Official Full Name
    CLP protease regulatory subunit X
    Primary source
    TAIR:AT5G53350
    Locus tag
    AT5G53350
    See related
    Araport:AT5G53350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLP protease regulatory subunit X; K19E1.15; K19E1_15
    Summary
    CLP protease regulatory subunit CLPX mRNA, nuclear gene
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CLPX in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (21643767..21647774)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin-associated/translation elongation factor EF1B protein Neighboring gene Galactosyltransferase family protein Neighboring gene ncRNA Neighboring gene TRAF-like superfamily protein Neighboring gene ncRNA Neighboring gene pectin methylesterase PCR fragment F Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease. Halperin T, et al. Plant Mol Biol, 2001 Mar. PMID 11352464
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    NM_124714.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrial matrix IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CLP protease regulatory subunit X
    NP_568792.1
    • CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21643767..21647774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124714.4 → NP_568792.1  CLP protease regulatory subunit X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568792.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48566, Q9FK07
      UniProtKB/TrEMBL
      A0A178USB7, A0A5S9YDL8
      Conserved Domains (1) summary
      PRK05342
      Location:156 → 526
      clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK07.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools