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    Got1/Sft2-like vescicle transport protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835700, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Got1/Sft2-like vescicle transport protein family
    Primary source
    TAIR:AT5G56020
    Locus tag
    AT5G56020
    See related
    Araport:AT5G56020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDA7.6; MDA7_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (22684386..22686466)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HEAT SHOCK PROTEIN 81.4 Neighboring gene heat shock protein 81-3 Neighboring gene heat shock protein 81-2 Neighboring gene Leucine-rich receptor-like protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001345177.1
    NM_124984.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Got1/Sft2-like vescicle transport protein family
    NP_200413.1
    • Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT4G26550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22684386..22686466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124984.4 → NP_200413.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200413.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULE6, Q9FKU4
      Conserved Domains (1) summary
      pfam04178
      Location:105 → 216
      Got1; Got1/Sft2-like family

    2. NM_001345177.1 → NP_001330101.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULE6, Q9FKU4
    Nucleotide Protein
    Heading Accession and Version

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