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    SYP41 syntaxin of plants 41 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832756, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP41
    Official Full Name
    syntaxin of plants 41
    Primary source
    TAIR:AT5G26980
    Locus tag
    AT5G26980
    See related
    Araport:AT5G26980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP41; ATTLG2A; F2P16.16; F2P16_16; syntaxin of plants 41
    Summary
    member of SYP4 Gene Family
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    Genomic context

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    See SYP41 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (9488133..9491092, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene Drought-responsive family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TNO1 is involved in salt tolerance and vacuolar trafficking in Arabidopsis. Kim SJ, et al. Plant Physiol, 2011 Jun. PMID 21521696, Free PMC Article
    2. Qa-SNAREs localized to the trans-Golgi network regulate multiple transport pathways and extracellular disease resistance in plants. Uemura T, et al. Proc Natl Acad Sci U S A, 2012 Jan 31. PMID 22307646, Free PMC Article
    3. AtVPS45 is a positive regulator of the SYP41/SYP61/VTI12 SNARE complex involved in trafficking of vacuolar cargo. Zouhar J, et al. Plant Physiol, 2009 Apr. PMID 19251905, Free PMC Article
    4. YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network. Chen Y, et al. J Mol Biol, 2005 Jul 1. PMID 15919093
    5. Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana. Kim SJ, et al. BMC Biochem, 2013 Sep 11. PMID 24021022, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036873.2
    NM_001343989.1
    NM_122580.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in Golgi to plasma membrane protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in Golgi to vacuole transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within membrane fusion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in salicylic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in trans-Golgi network membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle fusion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of SNARE complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in trans-Golgi network TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in trans-Golgi network transport vesicle TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 41
    NP_001031950.1
    • syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 2253 Blast hits to 2241 proteins in 274 species: Archae - 0; Bacteria - 54; Metazoa - 961; Fungi - 480; Plants - 362; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).
    NP_198050.1
    • syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9488133..9491092 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036873.2 → NP_001031950.1  syntaxin of plants 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031950.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04639, O65359
      UniProtKB/TrEMBL
      A0A5S9Y7I5, A0A654G4F8
      Conserved Domains (1) summary
      COG5325
      Location:73 → 318
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

    2. NM_122580.4 → NP_198050.1  syntaxin of plants 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198050.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04639, O65359
      UniProtKB/TrEMBL
      A0A5S9Y7I5, A0A654G4F8
      Conserved Domains (1) summary
      COG5325
      Location:73 → 318
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

    3. NM_001343989.1 → NP_001331924.1  syntaxin of plants 41 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04639, O65359
      UniProtKB/TrEMBL
      A0A5S9Y7I5, A0A654G4F8
      Conserved Domains (1) summary
      COG5325
      Location:73 → 318
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65359.1

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