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    Ubiquitin-associated (UBA) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824841, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ubiquitin-associated (UBA) protein
    Primary source
    TAIR:AT3G56740
    Locus tag
    AT3G56740
    See related
    Araport:AT3G56740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (21015371..21018157)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene ncRNA Neighboring gene plant/protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

    General gene information

    NM_115533.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within heat acclimation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in phagophore IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    Ubiquitin-associated (UBA) protein
    NP_191233.1
    • Ubiquitin-associated (UBA) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G41160.1); Has 305 Blast hits to 304 proteins in 119 species: Archae - 6; Bacteria - 5; Metazoa - 77; Fungi - 99; Plants - 90; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21015371..21018157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115533.3NP_191233.1  Ubiquitin-associated (UBA) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191233.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LET3
      UniProtKB/TrEMBL
      A0A5S9XN55, A0A654FGE9
      Conserved Domains (2) summary
      TIGR00601
      Location:209288
      rad23; UV excision repair protein Rad23
      pfam00627
      Location:251287
      UBA; UBA/TS-N domain