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    Cold acclimation protein WCOR413 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829876, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cold acclimation protein WCOR413 family
    Primary source
    TAIR:AT4G37220
    Locus tag
    AT4G37220
    See related
    Araport:AT4G37220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AP22.71; AP22_71
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (17515042..17516162)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene Photosystem II manganese-stabilising protein (PsbO) family Neighboring gene Uncharacterized protein family (UPF0497)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of sugar-modulated genes and evidence for in vivo sugar sensing in Arabidopsis. Gonzali S, et al. J Plant Res, 2006 Mar. PMID 16463203
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119885.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to fructose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to glucose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to sucrose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cold acclimation protein WCOR413 family
    NP_195439.1
    • Cold acclimation protein WCOR413 family; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: cold-regulated 413-plasma membrane 2 (TAIR:AT3G50830.1); Has 160 Blast hits to 157 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17515042..17516162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119885.3 → NP_195439.1  Cold acclimation protein WCOR413 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195439.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23164
      UniProtKB/TrEMBL
      A0A178UWS6, A0A5S9XZE4
      Conserved Domains (1) summary
      pfam05562
      Location:10 → 189
      WCOR413; Cold acclimation protein WCOR413
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23164.2

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