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    Hyp O-arabinosyltransferase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831194, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Hyp O-arabinosyltransferase-like protein
    Primary source
    TAIR:AT5G13500
    Locus tag
    AT5G13500
    See related
    Araport:AT5G13500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6I14.30; T6I14_30
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (4337894..4341088)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ADP/ATP carrier 2 Neighboring gene ncRNA Neighboring gene Ribosomal protein L10 family protein Neighboring gene peptidase M1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of three hydroxyproline O-arabinosyltransferases in Arabidopsis thaliana. Ogawa-Ohnishi M, et al. Nat Chem Biol, 2013 Nov. PMID 24036508
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121353.4
    NM_180482.2
    NM_203048.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    enables hydroxyproline O-arabinosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in Golgi trans cisterna IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Hyp O-arabinosyltransferase-like protein
    NP_196854.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850813.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 228 Blast hits to 200 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    NP_974777.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4337894..4341088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121353.4 → NP_196854.1  Hyp O-arabinosyltransferase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196854.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY51
      UniProtKB/TrEMBL
      A0A178UL89, A0A1W6AK51, A0A384L0E0

    2. NM_203048.2 → NP_974777.1  Hyp O-arabinosyltransferase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974777.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY51
      UniProtKB/TrEMBL
      A0A178UL89, A0A1W6AK51, A0A384L0E0

    3. NM_180482.2 → NP_850813.1  Hyp O-arabinosyltransferase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850813.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY51
      UniProtKB/TrEMBL
      A0A178UL89, A0A1W6AK51, A0A384L0E0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FY51.1

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