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    poly(U)-specific endoribonuclease-B protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3770328, updated on 18-Sep-2024

    Summary

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    Official Full Name
    poly(U)-specific endoribonuclease-B protein
    Primary source
    TAIR:AT4G17100
    Locus tag
    AT4G17100
    See related
    Araport:AT4G17100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4585C; FCAALL.349
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (9609910..9612655, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene chloroplast beta-amylase Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene pleckstrin homology (PH) domain-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene RAB GTPase homolog B1A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341190.1
    NM_117814.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    poly(U)-specific endoribonuclease-B protein
    NP_001319974.1
    • EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998).
    NP_193443.4
    • CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9609910..9612655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117814.4 → NP_193443.4  poly(U)-specific endoribonuclease-B protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JNE0

    2. NM_001341190.1 → NP_001319974.1  poly(U)-specific endoribonuclease-B protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EYX8, F4JNE1
    Nucleotide Protein
    Heading Accession and Version

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