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    carboxyl-terminal proteinase-like protein (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827465, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carboxyl-terminal proteinase-like protein (DUF239)
    Primary source
    TAIR:AT4G17505
    Locus tag
    AT4G17505
    See related
    Araport:AT4G17505
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FCAALL.20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (9764376..9766315, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ethylene responsive element binding factor 1 Neighboring gene miscRNA Neighboring gene ubiquitin C-terminal hydrolase 3 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117856.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxyl-terminal proteinase-like protein (DUF239)
    NP_193483.1
    • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G35250.1); Has 665 Blast hits to 642 proteins in 27 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 10; Plants - 644; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9764376..9766315 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117856.1 → NP_193483.1  carboxyl-terminal proteinase-like protein (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193483.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYR6, A0A5S9XTD0, F4JP70
      Conserved Domains (2) summary
      pfam03080
      Location:106 → 317
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:29 → 69
      DUF4409; Domain of unknown function (DUF4409)
    Nucleotide Protein
    Heading Accession and Version

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