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    COBL7 COBRA-like protein-7 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827298, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COBL7
    Official Full Name
    COBRA-like protein-7 precursor
    Primary source
    TAIR:AT4G16120
    Locus tag
    AT4G16120
    See related
    Araport:AT4G16120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA SEC61 BETA 1; ATSEB1; COBRA-like protein-7 precursor; DL4100C; FCAALL.104; SEB1; SEC61 BETA 1
    Summary
    putative membrane-anchored cell wall protein
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    Genomic context

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    See COBL7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (9116209..9119379, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Thr Neighboring gene response regulator 2 Neighboring gene arabinose kinase Neighboring gene proline-rich family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. COBL7 is required for stomatal formation via regulation of cellulose deposition in Arabidopsis. Ge S, et al. New Phytol, 2024 Jan. PMID 37853545
    2. The identification of candidate genes for a reverse genetic analysis of development and function in the Arabidopsis gynoecium. Scutt CP, et al. Plant Physiol, 2003 Jun. PMID 12805595, Free PMC Article
    3. Analysis of a 14-kb fragment containing a putative cell wall gene and a candidate for the ARA1, arabinose kinase, gene from chromosome IV of Arabidopsis thaliana. Gy I, et al. Gene, 1998 Mar 16. PMID 9524266
    4. COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition. Li Z, et al. Biochem Biophys Res Commun, 2022 Mar 12. PMID 35104663
    5. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COBL7 is required for stomatal formation via regulation of cellulose deposition in Arabidopsis.
      Title: COBL7 is required for stomatal formation via regulation of cellulose deposition in Arabidopsis.
    2. COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.
      Title: COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.
    Submit: New GeneRIF Correction

    General gene information

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    NM_117705.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellulose microfibril organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall cellulose biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell tip growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cell plate IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    COBRA-like protein-7 precursor
    NP_567484.1
    • COBRA-like protein-7 precursor (COBL7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, Golgi apparatus, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein 8 precursor (TAIR:AT3G16860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9116209..9119379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117705.6 → NP_567484.1  COBRA-like protein-7 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567484.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24605, Q8GZ17
      UniProtKB/TrEMBL
      A0A5S9XSW3
      Conserved Domains (1) summary
      pfam04833
      Location:233 → 412
      COBRA; COBRA-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GZ17.2

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