AAA-type ATPase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: AAA-type ATPase family protein
Primary source: TAIR:AT2G45500
Locus tag: AT2G45500
See related: Araport:AT2G45500
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F17K2.3
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 13

Sequence:: Chromosome: 2; NC_003071.7 (18749352..18752866, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001084594.2

Supported by ESTs:

NM_001337136.1

Supported by ESTs:

NM_001337137.1

Supported by ESTs:

NM_001337138.1

Supported by ESTs:

NM_130112.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: AAA-type ATPase family protein

NP_001078063.1

AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35832 Blast hits to 33399 proteins in 3215 species: Archae - 1489; Bacteria - 15370; Metazoa - 4981; Fungi - 3599; Plants - 2905; Viruses - 24; Other Eukaryotes - 7464 (source: NCBI BLink).

NP_182074.4

AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35953 Blast hits to 33523 proteins in 3228 species: Archae - 1492; Bacteria - 15478; Metazoa - 4981; Fungi - 3500; Plants - 2910; Viruses - 26; Other Eukaryotes - 7566 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

18749352..18752866 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001084594.2 → NP_001078063.1 AAA-type ATPase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078063.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VXP8, A0A5S9X7B3, Q0WMJ4

Conserved Domains (4) summary

smart00382
Location:248 → 384

AAA; ATPases associated with a variety of cellular activities

cd02679
Location:52 → 130

MIT_spastin; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be ...

pfam00004
Location:252 → 382

AAA; ATPase family associated with various cellular activities (AAA)

pfam09336
Location:445 → 485

Vps4_C; Vps4 C terminal oligomerization domain
NM_130112.5 → NP_182074.4 AAA-type ATPase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_182074.4

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VVG1, A8MRR2

Conserved Domains (4) summary

smart00382
Location:252 → 388

AAA; ATPases associated with a variety of cellular activities

cd02679
Location:52 → 130

MIT_spastin; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be ...

pfam00004
Location:256 → 386

AAA; ATPase family associated with various cellular activities (AAA)

pfam09336
Location:449 → 489

Vps4_C; Vps4 C terminal oligomerization domain
NM_001337136.1 → NP_001323444.1 AAA-type ATPase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AX27
NM_001337137.1 → NP_001323446.1 AAA-type ATPase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AX27
NM_001337138.1 → NP_001323445.1 AAA-type ATPase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VXP8, A0A1P8AX50, A0A5S9X7B3