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    transmembrane protein, putative (DUF1068) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817818, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1068)
    Primary source
    TAIR:AT2G32580
    Locus tag
    AT2G32580
    See related
    Araport:AT2G32580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26B15.14; T26B15_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (13827425..13829317)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene F-box family protein Neighboring gene condensin complex subunit Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene cellulose synthase-like B1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NKS1/ELMO4 is an integral protein of a pectin synthesis protein complex and maintains Golgi morphology and cell adhesion in Arabidopsis. Lathe RS, et al. Proc Natl Acad Sci U S A, 2024 Apr 9. PMID 38579009, Free PMC Article
    2. Golgi ELMO1 binds QUA1, QUA2, GAUT9, and ELMO4 and is required for pectin accumulation in Arabidopsis. Kohorn BD, et al. PLoS One, 2023. PMID 37939087, Free PMC Article
    3. Mutation of an Arabidopsis Golgi membrane protein ELMO1 reduces cell adhesion. Kohorn BD, et al. Development, 2021 May 15. PMID 34015094, Free PMC Article
    4. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NKS1/ELMO4 is an integral protein of a pectin synthesis protein complex and maintains Golgi morphology and cell adhesion in Arabidopsis.
      Title: NKS1/ELMO4 is an integral protein of a pectin synthesis protein complex and maintains Golgi morphology and cell adhesion in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202729.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cell wall pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    is_active_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi medial cisterna HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1068)
    NP_001189658.1
    • Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT1G05070.1).
    NP_565746.1
    • Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT1G05070.1); Has 118 Blast hits to 118 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13827425..13829317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128817.5 → NP_565746.1  transmembrane protein, putative (DUF1068) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565746.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X3D7, O80895, Q8LE30
      Conserved Domains (1) summary
      pfam06364
      Location:5 → 168
      DUF1068; Protein of unknown function (DUF1068)

    2. NM_001202729.1 → NP_001189658.1  transmembrane protein, putative (DUF1068) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189658.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLE5, F4ITS6
      Conserved Domains (1) summary
      pfam06364
      Location:3 → 106
      DUF1068; Protein of unknown function (DUF1068)
    Nucleotide Protein
    Heading Accession and Version

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