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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818545, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G39620
    Locus tag
    AT2G39620
    See related
    Araport:AT2G39620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12L6.28; F12L6_28
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (16518890..16521544, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Cys Neighboring gene tRNA-Cys Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene glycosyl hydrolase family 17 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129518.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_181492.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G09040.1); Has 57584 Blast hits to 13450 proteins in 210 species: Archae - 0; Bacteria - 3; Metazoa - 36; Fungi - 107; Plants - 56697; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16518890..16521544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129518.2 → NP_181492.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181492.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80647
      UniProtKB/TrEMBL
      A0A654F0B8
      Conserved Domains (5) summary
      COG0457
      Location:236 → 395
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00756
      Location:570 → 604
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:672 → 699
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:367 → 397
      PPR; PPR repeat
      pfam13041
      Location:365 → 412
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80647.1

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