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    SSL1 strictosidine synthase-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818729, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SSL1
    Official Full Name
    strictosidine synthase-like 1
    Primary source
    TAIR:AT2G41300
    Locus tag
    AT2G41300
    See related
    Araport:AT2G41300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13H10.15; F13H10_15; strictosidine synthase-like 1
    Summary
    Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
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    Genomic context

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    See SSL1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (17214219..17216292, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene strictosidine synthase-like 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene response regulator 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129694.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables strictosidine synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    strictosidine synthase-like 1
    NP_181662.3
    • strictosidine synthase-like 1 (SSL1); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G57010.1); Has 958 Blast hits to 946 proteins in 182 species: Archae - 1; Bacteria - 181; Metazoa - 221; Fungi - 0; Plants - 461; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17214219..17216292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129694.5 → NP_181662.3  strictosidine synthase-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181662.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IJZ6, Q9ZVB7
      UniProtKB/TrEMBL
      A0A178VWC4, A0A5S9X616, A0A654F0W0
      Conserved Domains (2) summary
      COG3386
      Location:88 → 315
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      pfam03088
      Location:182 → 270
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IJZ6.1

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