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    PP2-B10 phloem protein 2-B10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814767, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PP2-B10
    Official Full Name
    phloem protein 2-B10
    Primary source
    TAIR:AT2G02360
    Locus tag
    AT2G02360
    See related
    Araport:AT2G02360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPP2-B10; phloem protein 2-B10; T16F16.15; T16F16_15
    Summary
    Encodes an F-box protein containing a Nictaba-related lectin domain that can act as a carbohydrate-binding protein.
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    Genomic context

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    See PP2-B10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (619323..620793, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phloem protein 2-B8 Neighboring gene SKP1 interacting partner 3 Neighboring gene SNARE associated Golgi protein family Neighboring gene glutathione S-transferase (class zeta) 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis F-box protein containing a Nictaba-related lectin domain interacts with N-acetyllactosamine structures. Stefanowicz K, et al. FEBS Open Bio, 2012. PMID 23650594, Free PMC Article
    2. Expression and interaction analysis of Arabidopsis Skp1-related genes. Takahashi N, et al. Plant Cell Physiol, 2004 Jan. PMID 14749489
    3. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Dinant S, et al. Plant Physiol, 2003 Jan. PMID 12529520, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_126293.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables carbohydrate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phloem protein 2-B10
    NP_178341.1
    • phloem protein 2-B10 (PP2-B10); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 572 Blast hits to 558 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      619323..620793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126293.4 → NP_178341.1  phloem protein 2-B10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178341.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVQ6
      UniProtKB/TrEMBL
      A0A7G2E708
      Conserved Domains (2) summary
      pfam00646
      Location:12 → 58
      F-box; F-box domain
      pfam14299
      Location:104 → 268
      PP2; Phloem protein 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVQ6.1

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