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    RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818311, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RS2Z33
    Official Full Name
    arginine/serine-rich zinc knuckle-containing protein 33
    Primary source
    TAIR:AT2G37340
    Locus tag
    AT2G37340
    See related
    Araport:AT2G37340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arginine/serine-rich zinc knuckle-containing protein 33; ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTEIN 33; AT-RS2Z33; ATRSZ33; F3G5.13; F3G5_13; RSZ33
    Summary
    encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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    Genomic context

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    See RS2Z33 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (15670147..15672700, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene aluminum sensitive 3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ABC-2 type transporter family protein Neighboring gene centrosomal protein of 135 kDa-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CYCLIN-DEPENDENT KINASE G1 is associated with the spliceosome to regulate CALLOSE SYNTHASE5 splicing and pollen wall formation in Arabidopsis. Huang XY, et al. Plant Cell, 2013 Feb. PMID 23404887, Free PMC Article
    2. Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells. Tillemans V, et al. Plant J, 2005 Feb. PMID 15686520
    3. Transportin-SR is required for proper splicing of resistance genes and plant immunity. Xu S, et al. PLoS Genet, 2011 Jun. PMID 21738492, Free PMC Article
    4. Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei. Lorković ZJ, et al. Exp Cell Res, 2008 Oct 15. PMID 18674533
    5. Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. Lopato S, et al. J Biol Chem, 2002 Oct 18. PMID 12176998

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336653.1
    NM_001336654.1
    NM_001336655.1
    NM_179949.3
    NM_201890.2
    NM_201891.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within mRNA splicing, via spliceosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within spliceosomal complex assembly TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arginine/serine-rich zinc knuckle-containing protein 33
    NP_850280.1
    • arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.2); Has 128112 Blast hits to 126672 proteins in 4377 species: Archae - 175; Bacteria - 14621; Metazoa - 47197; Fungi - 12494; Plants - 32367; Viruses - 521; Other Eukaryotes - 20737 (source: NCBI BLink).
    NP_973619.1
    • arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973620.1
    • arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15670147..15672700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179949.3 → NP_850280.1  arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850280.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IQ37, Q67Y02, Q8VYA5, Q9FYA7, Q9ZUT2
      UniProtKB/TrEMBL
      A0A178VWS1, A0A5S9X4S8
      Conserved Domains (3) summary
      PTZ00368
      Location:86 → 144
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      NF033845
      Location:209 → 289
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
      cl17169
      Location:12 → 81
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_201890.2 → NP_973619.1  arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973619.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYA5
      Conserved Domains (2) summary
      pfam00098
      Location:69 → 85
      zf-CCHC; Zinc knuckle
      cl17169
      Location:20 → 51
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_201891.2 → NP_973620.1  arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973620.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X4S8
      Conserved Domains (3) summary
      COG0724
      Location:3 → 44
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam00098
      Location:58 → 74
      zf-CCHC; Zinc knuckle
      cl17169
      Location:1 → 40
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_001336655.1 → NP_001325321.1  arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYA5

    5. NM_001336654.1 → NP_001325323.1  arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X4S8

    6. NM_001336653.1 → NP_001325322.1  arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYA5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYA5.1

    Gene LinkOut

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