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    SRF1 STRUBBELIG-receptor family 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816618, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SRF1
    Official Full Name
    STRUBBELIG-receptor family 1
    Primary source
    TAIR:AT2G20850
    Locus tag
    AT2G20850
    See related
    Araport:AT2G20850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5H14.18; F5H14_18; STRUBBELIG-receptor family 1
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    Genomic context

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    See SRF1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Sequence:
    Chromosome: 2; NC_003071.7 (8975313..8979437, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Secretory carrier membrane protein (SCAMP) family protein Neighboring gene lipoic acid synthase 1 Neighboring gene cell wall protein precursor Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335713.1
    NM_127654.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    STRUBBELIG-receptor family 1
    NP_565489.2
    • STRUBBELIG-receptor family 1 (SRF1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 150345 Blast hits to 104966 proteins in 4098 species: Archae - 89; Bacteria - 11039; Metazoa - 39266; Fungi - 7103; Plants - 77215; Viruses - 282; Other Eukaryotes - 15351 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8975313..8979437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127654.4 → NP_565489.2  STRUBBELIG-receptor family 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565489.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q06BH2, Q06BH3, Q06BH4, Q93ZY8, Q9MAS2
      UniProtKB/TrEMBL
      A0A654EUM3
      Conserved Domains (5) summary
      sd00033
      Location:102 → 123
      LRR_RI; leucine-rich repeat [structural motif]
      pfam07714
      Location:484 → 752
      Pkinase_Tyr; Protein tyrosine kinase
      pfam08263
      Location:34 → 74
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam10577
      Location:318 → 357
      UPF0560; uncharacterized protein family UPF0560
      cl21453
      Location:484 → 755
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001335713.1 → NP_001324598.1  STRUBBELIG-receptor family 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0M4, A0A654EUM3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q06BH3.2

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