U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EFE ethylene-forming enzyme [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839345, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EFE
    Official Full Name
    ethylene-forming enzyme
    Primary source
    TAIR:AT1G05010
    Locus tag
    AT1G05010
    See related
    Araport:AT1G05010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE; ACO4; EAT1; ethylene forming enzyme; ethylene-forming enzyme; ETHYLENE-FORMING ENZYME; T7A14.12; T7A14_12
    Summary
    Encodes 1-aminocyclopropane-1-carboxylate oxidase
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EFE in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (1431177..1433010, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Phosphotyrosine protein phosphatases superfamily protein Neighboring gene PPR containing protein Neighboring gene ncRNA Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Isolation and characterization of a gene involved in ethylene biosynthesis from Arabidopsis thaliana. Gómez-Lim MA, et al. Gene, 1993 Dec 8. PMID 8262380
    2. Brassinosteroids signaling via BZR1 down-regulates expression of ACC oxidase 4 to control growth of Arabidopsis thaliana seedlings. Moon J, et al. Plant Signal Behav, 2020 Apr 2. PMID 32114884, Free PMC Article
    3. Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis. Thatcher LF, et al. Plant J, 2009 Jun. PMID 19220788
    4. Genes involved in biosynthesis and signalisation of ethylene in Brassica oleracea and Arabidopsis thaliana: identification and genome comparative mapping of specific gene homologues. Babula D, et al. Theor Appl Genet, 2006 Feb. PMID 16311726
    5. Saturated very-long-chain fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. Qin YM, et al. Plant Cell, 2007 Nov. PMID 17993622, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Brassinosteroids signaling via BZR1 down-regulates expression of ACC oxidase 4 to control growth of Arabidopsis thaliana seedlings.
      Title: Brassinosteroids signaling via BZR1 down-regulates expression of ACC oxidase 4 to control growth of Arabidopsis thaliana seedlings.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_100380.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1-aminocyclopropane-1-carboxylate oxidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to fatty acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in ethylene biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ethylene biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within ethylene biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ethylene-forming enzyme
    NP_171994.1
    • ethylene-forming enzyme (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0; Bacteria - 1142; Metazoa - 103; Fungi - 1035; Plants - 4924; Viruses - 0; Other Eukaryotes - 1383 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1431177..1433010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100380.4 → NP_171994.1  ethylene-forming enzyme [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171994.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q06588, Q94K94, Q9S9K8
      UniProtKB/TrEMBL
      A0A178WHU2, A0A5S9SNR3
      Conserved Domains (1) summary
      PLN02299
      Location:1 → 323
      PLN02299; 1-aminocyclopropane-1-carboxylate oxidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q06588.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.