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    AAA-type ATPase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839045, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AAA-type ATPase family protein
    Primary source
    TAIR:AT1G24290
    Locus tag
    AT1G24290
    See related
    Araport:AT1G24290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I6.23; F3I6_23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (8612505..8614283, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene glucose-6-phosphate dehydrogenase 3 Neighboring gene ncRNA Neighboring gene GYF domain-containing protein Neighboring gene nuclear pore complex protein Neighboring gene Six-hairpin glycosidases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102275.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AAA-type ATPase family protein
    NP_173839.1
    • AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), MgsA AAA+ ATPase C-terminal (InterPro:IPR021886), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1); Has 22422 Blast hits to 22383 proteins in 2992 species: Archae - 614; Bacteria - 15728; Metazoa - 553; Fungi - 700; Plants - 273; Viruses - 62; Other Eukaryotes - 4492 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8612505..8614283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102275.4 → NP_173839.1  AAA-type ATPase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173839.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VS65, A0A654EDF2, A6XGZ7, O48696
      Conserved Domains (5) summary
      PRK13342
      Location:102 → 507
      PRK13342; recombination factor protein RarA; Reviewed
      cd14389
      Location:1 → 37
      UBA_AAA_plant; UBA domain found in plant AAA-type ATPase-like proteins
      pfam00004
      Location:140 → 257
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12002
      Location:359 → 509
      MgsA_C; MgsA AAA+ ATPase C terminal
      pfam16193
      Location:281 → 358
      AAA_assoc_2; AAA C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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