U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FAF2 FANTASTIC four-like protein (DUF3049) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839563, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    FAF2
    Official Full Name
    FANTASTIC four-like protein (DUF3049)
    Primary source
    TAIR:AT1G03170
    Locus tag
    AT1G03170
    See related
    Araport:AT1G03170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K9.22; F15K9_22; FANTASTIC FOUR 2; FLORAL TRANSITION AT THE MERISTEM5; FTM5
    Summary
    A member of the FAF family proteins encoded by the FANTASTIC FOUR (FAF) genes: AT4G02810 (FAF1), AT1G03170 (FAF2), AT5G19260 (FAF3) and AT3G06020 (FAF4). FAFs have the potential to regulate shoot meristem size in Arabidopsis thaliana. FAFs can repress WUS, which ultimately leads to an arrest of meristem activity in FAF overexpressing lines.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FAF2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (768376..770684)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FZO-like protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene non-structural protein Neighboring gene RAD3-like DNA-binding helicase protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The FANTASTIC FOUR proteins influence shoot meristem size in Arabidopsis thaliana. Wahl V, et al. BMC Plant Biol, 2010 Dec 22. PMID 21176196, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_100199.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    FANTASTIC four-like protein (DUF3049)
    NP_563678.1
    • Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT4G02810.1); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      768376..770684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100199.2 → NP_563678.1  FANTASTIC four-like protein (DUF3049) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563678.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXU9, Q9ZVR9
      UniProtKB/TrEMBL
      A0A178WKJ4, A0A5S9SC69, A0A654E7S2, A0A7G2DPL0
      Conserved Domains (1) summary
      pfam11250
      Location:118 → 169
      FAF; Fantastic Four meristem regulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GXU9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.