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    coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817335, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil protein
    Primary source
    TAIR:AT2G27900
    Locus tag
    AT2G27900
    See related
    Araport:AT2G27900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT2G27890; AT2G27910; T1E2.18; T1E2_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    26
    Sequence:
    Chromosome: 2; NC_003071.7 (11877421..11886013)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Argonaute family protein Neighboring gene serine carboxypeptidase-like 51 Neighboring gene PLATZ transcription factor family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036356.1
    NM_128349.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of EARP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil protein
    NP_001031433.1
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_180357.2
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11877421..11886013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128349.3 → NP_180357.2  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180357.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVF6, B9DFD2, Q8RXC2
      Conserved Domains (2) summary
      pfam10474
      Location:889 → 1120
      DUF2451; Protein of unknown function C-terminus (DUF2451)
      pfam10475
      Location:143 → 421
      Vps54_N; Vacuolar-sorting protein 54, of GARP complex

    2. NM_001036356.1 → NP_001031433.1  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031433.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVF6, B9DFD2, Q8RXC2
      Conserved Domains (2) summary
      pfam10474
      Location:889 → 1120
      DUF2451; Protein of unknown function C-terminus (DUF2451)
      pfam10475
      Location:143 → 421
      Vps54_N; Vacuolar-sorting protein 54, of GARP complex
    Nucleotide Protein
    Heading Accession and Version

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