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    MTR4 RNA helicase, ATP-dependent, SK12/DOB1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842269, updated on 18-Sep-2024

    Summary

    Official Symbol
    MTR4
    Official Full Name
    RNA helicase, ATP-dependent, SK12/DOB1 protein
    Primary source
    TAIR:AT1G59760
    Locus tag
    AT1G59760
    See related
    Araport:AT1G59760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMTR4; F23H11.8; F23H11_8; homolog of yeast MTR4
    Summary
    Encodes MTR4, a putative RNA helicase and exosome co-factor. Required for proper rRNA biogenesis and development.
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    Genomic context

    See MTR4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (21984428..21990286, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene thioredoxin H-type 7 Neighboring gene Major facilitator superfamily protein Neighboring gene auxin response factor 1 Neighboring gene pseudo Neighboring gene NB-ARC domain-containing disease resistance protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    General gene information

    NM_104669.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleoplasm PubMed 
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    RNA helicase, ATP-dependent, SK12/DOB1 protein
    NP_176185.1
    • RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21984428..21990286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104669.4 → NP_176185.1  RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176185.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIF2
      UniProtKB/TrEMBL
      A0A178W5A1, A0A5S9WQP6, A0A654EKU7
      Conserved Domains (1) summary
      COG4581
      Location:40 → 988
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
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