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    CPK29 calcium-dependent protein kinase 29 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843936, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CPK29
    Official Full Name
    calcium-dependent protein kinase 29
    Primary source
    TAIR:AT1G76040
    Locus tag
    AT1G76040
    See related
    Araport:AT1G76040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    calcium-dependent protein kinase 29; T4O12.25; T4O12_25
    Summary
    member of Calcium Dependent Protein Kinase
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    Genomic context

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    See CPK29 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (28537593..28540707)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene ATPase, V1 complex, subunit B protein Neighboring gene Pseudouridine synthase family protein Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Calcium-dependent protein kinase 29 modulates PIN-FORMED polarity and Arabidopsis development via its own phosphorylation code. Lee H, et al. Plant Cell, 2021 Nov 4. PMID 34402905, Free PMC Article
    2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Calcium-dependent protein kinase 29 modulates PIN-FORMED polarity and Arabidopsis development via its own phosphorylation code.
      Title: Calcium-dependent protein kinase 29 modulates PIN-FORMED polarity and Arabidopsis development via its own phosphorylation code.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001334707.1
    NM_001334708.1
    NM_106253.4
    NM_202421.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    calcium-dependent protein kinase 29
    NP_001319387.1
    • calcium-dependent protein kinase 29 (CPK29); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 15 (TAIR:AT4G21940.2); Has 71074 Blast hits to 61991 proteins in 2513 species: Archae - 15; Bacteria - 1854; Metazoa - 30398; Fungi - 13026; Plants - 12160; Viruses - 42; Other Eukaryotes - 13579 (source: NCBI BLink).
    NP_974150.2
    • calcium-dependent protein kinase 29 (CPK29); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1); Has 142530 Blast hits to 132137 proteins in 3984 species: Archae - 133; Bacteria - 14530; Metazoa - 52901; Fungi - 18639; Plants - 31038; Viruses - 504; Other Eukaryotes - 24785 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28537593..28540707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334707.1 → NP_001319387.1  calcium-dependent protein kinase 29 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWL2

    2. NM_001334708.1 → NP_001320822.1  calcium-dependent protein kinase 29 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI67, A0A1P8AP07

    3. NM_202421.3 → NP_974150.2  calcium-dependent protein kinase 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974150.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI67
      Conserved Domains (4) summary
      PTZ00184
      Location:405 → 548
      PTZ00184; calmodulin; Provisional
      smart00220
      Location:112 → 370
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd00051
      Location:489 → 549
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd05117
      Location:112 → 369
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases

    4. NM_106253.4 → NP_177731.2  calcium-dependent protein kinase 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177731.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWL2
      Conserved Domains (3) summary
      PTZ00184
      Location:167 → 310
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:251 → 311
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21453
      Location:29 → 131
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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