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    SOL1 carboxypeptidase D [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843499, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SOL1
    Official Full Name
    carboxypeptidase D
    Primary source
    TAIR:AT1G71696
    Locus tag
    AT1G71696
    See related
    Araport:AT1G71696
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14O23.7; F14O23_7; SUPPRESSOR OF LLP1 1
    Summary
    Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns.SOL1 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol1 partially suppresses the short root phenotype caused by CLE19 overexpression.
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    Genomic context

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    See SOL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (26966766..26970603)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 12 Neighboring gene Peroxidase superfamily protein Neighboring gene choline kinase 1 Neighboring gene tRNA-Gly Neighboring gene DNAse I-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SUPPRESSOR OF LLP1 1-mediated C-terminal processing is critical for CLE19 peptide activity. Tamaki T, et al. Plant J, 2013 Dec. PMID 24118638
    2. Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Casamitjana-Martínez E, et al. Curr Biol, 2003 Aug 19. PMID 12932329
    3. SOL1 and SOL2 regulate fate transition and cell divisions in the Arabidopsis stomatal lineage. Simmons AR, et al. Development, 2019 Feb 4. PMID 30665887, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_105827.3
    NM_202397.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of root meristem growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxypeptidase D
    NP_177314.2
    • SUPPRESSOR OF LLP1 1 (SOL1); FUNCTIONS IN: metallocarboxypeptidase activity, carboxypeptidase activity, zinc ion binding; INVOLVED IN: regulation of root meristem growth; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carboxypeptidase-like, regulatory domain (InterPro:IPR008969), Peptidase M14, carboxypeptidase A (InterPro:IPR000834), Carboxypeptidase, regulatory domain (InterPro:IPR014766); Has 2124 Blast hits to 1909 proteins in 351 species: Archae - 6; Bacteria - 563; Metazoa - 1124; Fungi - 40; Plants - 76; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
    NP_974126.1
    • SUPPRESSOR OF LLP1 1 (SOL1); FUNCTIONS IN: metallocarboxypeptidase activity, carboxypeptidase activity, zinc ion binding; INVOLVED IN: regulation of root meristem growth; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carboxypeptidase-like, regulatory domain (InterPro:IPR008969), Peptidase M14, carboxypeptidase A (InterPro:IPR000834), Carboxypeptidase, regulatory domain (InterPro:IPR014766); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26966766..26970603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105827.3 → NP_177314.2  carboxypeptidase D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177314.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5I6, F4IA17
      Conserved Domains (2) summary
      cd11308
      Location:273 → 348
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
      cd18172
      Location:18 → 268
      M14_CP_plant; Zinc carboxypeptidase, including SOL1, a carboxypeptidase D in plant

    2. NM_202397.2 → NP_974126.1  carboxypeptidase D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974126.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9J2, Q9M9H7
      UniProtKB/TrEMBL
      A0A178W7I3, A0A654EPP8
      Conserved Domains (2) summary
      cd11308
      Location:342 → 417
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
      cd18172
      Location:65 → 337
      M14_CP_plant; Zinc carboxypeptidase, including SOL1, a carboxypeptidase D in plant
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9H7.1

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