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    IGMT4 O-methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838709, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IGMT4
    Official Full Name
    O-methyltransferase family protein
    Primary source
    TAIR:AT1G21130
    Locus tag
    AT1G21130
    See related
    Araport:AT1G21130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    indole glucosinolate O-methyltransferase 4; T22I11.4; T22I11_4
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    Genomic context

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    See IGMT4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (7398814..7400736, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene O-methyltransferase family protein Neighboring gene O-methyltransferase family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PP2A-B'γ modulates foliar trans-methylation capacity and the formation of 4-methoxy-indol-3-yl-methyl glucosinolate in Arabidopsis leaves. Rahikainen M, et al. Plant J, 2017 Jan. PMID 27598402
    2. Plant O-methyltransferases: molecular analysis, common signature and classification. Ibrahim RK, et al. Plant Mol Biol, 1998 Jan. PMID 9484457
    3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101967.4
    NM_179362.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    O-methyltransferase family protein
    NP_173537.1
    • O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1); Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1; Bacteria - 963; Metazoa - 105; Fungi - 662; Plants - 1542; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    NP_849693.1
    • O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21120.1); Has 1760 Blast hits to 1758 proteins in 271 species: Archae - 0; Bacteria - 265; Metazoa - 8; Fungi - 22; Plants - 1437; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7398814..7400736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101967.4 → NP_173537.1  O-methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173537.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A2RVV0, Q0WUM9, Q8LGI0, Q9LPU8
      UniProtKB/TrEMBL
      A0A654EGS4, A0A7G2DYD6
      Conserved Domains (2) summary
      pfam08100
      Location:40 → 95
      dimerization; dimerization domain
      cl17173
      Location:150 → 354
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. NM_179362.1 → NP_849693.1  O-methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849693.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LPU8
      Conserved Domains (2) summary
      pfam08100
      Location:40 → 95
      Dimerization; Dimerization domain
      cl17173
      Location:141 → 274
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPU8.1

    Gene LinkOut

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