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    Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838592, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pathogenesis-related thaumatin superfamily protein
    Primary source
    TAIR:AT1G20030
    Locus tag
    AT1G20030
    See related
    Araport:AT1G20030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20H2.19; T20H2_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (6945425..6947344)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ferredoxin-NADP[+]-oxidoreductase 2 Neighboring gene tRNA-Leu Neighboring gene C-8,7 sterol isomerase Neighboring gene ATP binding microtubule motor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101858.2
    NM_202141.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Pathogenesis-related thaumatin superfamily protein
    NP_173432.2
    • Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0; Bacteria - 45; Metazoa - 56; Fungi - 77; Plants - 1416; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).
    NP_973870.1
    • Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6945425..6947344
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202141.1 → NP_973870.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973870.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EBE0, B9DGE1, Q9LNT0
      Conserved Domains (1) summary
      cd09218
      Location:21 → 244
      TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs

    2. NM_101858.2 → NP_173432.2  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173432.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DU79, Q8GUG1
      Conserved Domains (1) summary
      pfam00314
      Location:9 → 228
      Thaumatin; Thaumatin family
    Nucleotide Protein
    Heading Accession and Version

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